1E5R Oxidoreductase date Jul 28, 2000
title Proline 3-Hydroxylase (Type II) -Apo Form
authors I.J.Clifton, L.C.Hsueh, J.E.Baldwin, C.J.Schofield, K.Harlos
compound source
Molecule: Proline Oxidase
Chain: A, B
 Organism_scientific: Streptomyces Sp.
Organism_taxid: 60871
Strain: Th1
symmetry Space Group: P 31 2 1
R_factor 0.225 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.540 72.540 223.920 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
related structures by homologous chain: 1E5S
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of proline 3-hydroxylase. Evolution of the family of 2-oxoglutarate dependent oxygenases., Clifton IJ, Hsueh LC, Baldwin JE, Harlos K, Schofield CJ, Eur J Biochem 2001 Dec;268(24):6625-36. PMID:11737217
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (96 Kb) [Save to disk]
  • Biological Unit Coordinates (1e5r.pdb1.gz) 91 Kb
  • CSU: Contacts of Structural Units for 1E5R
  • Likely Quarternary Molecular Structure file(s) for 1E5R
  • Structure Factors (227 Kb)
  • Retrieve 1E5R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E5R from S2C, [Save to disk]
  • Re-refined 1e5r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1E5R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1E5R
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E5R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e5ra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1e5rb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e5r] [1e5r_A] [1e5r_B]
  • SWISS-PROT database: [O09345]
  • Domain organization of [O09345_9ACTO] by SWISSPFAM
    • Other resources with information on 1E5R
  • Community annotation for 1E5R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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