1E8S Alu Ribonucleoprotein Particle date Sep 29, 2000
title Alu Domain Of The Mammalian Srp (Potential Alu Retroposition Intermediate)
authors O.Weichenrieder, K.Wild, K.Strub, S.Cusack
compound source
Molecule: Signal Recognition Particle 9 Kda Protein
Chain: A
Synonym: Srp9
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Cytoplasm, Nucleus?
Plasmid: Peh9
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Signal Recognition Particle 14 Kda Protein
Chain: B
Fragment: Truncated After K107
Synonym: Srp14
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Cytoplasm, Nucleus?
Plasmid: Peh14deltar
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: 7sl Rna, 88-Mer
Chain: C
Fragment: Alu Rna
Mutation: Yes
Other_details: G101-U164 And A383-U399 Of 7sl Rna Circular Permutation (G101 Linked To U399) Additional
Nucleotides\: 5' G380, C381, U382 And 3' A165, G166, U167, C168

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Cellular_location: Cytoplasm, Nucleus
Plasmid: Psa88(2)H
Other_details: The Rna Was Produced By In Vitro Transcription With T7 Rna Polymerase Using Ribozyme Technology.
symmetry Space Group: P 42 21 2
R_factor 0.388 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
143.330 143.330 60.360 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.00 Å
ligand EU3 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructure and assembly of the Alu domain of the mammalian signal recognition particle., Weichenrieder O, Wild K, Strub K, Cusack S, Nature 2000 Nov 9;408(6809):167-73. PMID:11089964
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (9 Kb) [Save to disk]
  • Biological Unit Coordinates (1e8s.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 1E8S
  • CSU: Contacts of Structural Units for 1E8S
  • Likely Quarternary Molecular Structure file(s) for 1E8S
  • Retrieve 1E8S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E8S from S2C, [Save to disk]
  • View 1E8S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E8S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E8S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e8sa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1e8sb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e8s_B] [1e8s_A] [1e8s_C] [1e8s]
  • SWISS-PROT database: [P49458] [P37108]
  • Belongs to the general secretory pathway (sec) family according to TCDB.
  • Domain organization of [SRP09_HUMAN] [SRP14_HUMAN] by SWISSPFAM
  • Other resources with information on 1E8S
  • Community annotation for 1E8S at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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