1E8Z Transferase date Oct 03, 2000
title Structure Determinants Of Phosphoinositide 3-Kinase Inhibiti Wortmannin, Ly294002, Quercetin, Myricetin And Staurosporin
authors E.H.Walker, M.E.Pacold, O.Perisic, L.Stephens, P.T.Hawkins, M.P.W R.L.Williams
compound source
Molecule: Phosphatidylinositol 3-Kinase Catalytic Subunit
Chain: A
Fragment: Pi3-Kinase P110 Subunit Gamma
Synonym: Ptdins-3-Kinase P110, Pi3k
Ec: 2.7.1.137
Engineered: Yes
Mutation: Yes
Other_details: Staurosporine
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_strain: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pvl1393
Expression_system_gene: H144
symmetry Space Group: C 1 2 1
R_factor 0.232 R_Free 0.291
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.486 66.988 104.115 90.00 97.20 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand STU BindingDB enzyme Transferase E.C.2.7.1.137 BRENDA
related structures by homologous chain: 1E7V, 1E8X
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural determinants of phosphoinositide 3-kinase inhibition by wortmannin, LY294002, quercetin, myricetin, and staurosporine., Walker EH, Pacold ME, Perisic O, Stephens L, Hawkins PT, Wymann MP, Williams RL, Mol Cell 2000 Oct;6(4):909-19. PMID:11090628
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk]
  • Biological Unit Coordinates (1e8z.pdb1.gz) 137 Kb
  • LPC: Ligand-Protein Contacts for 1E8Z
  • CSU: Contacts of Structural Units for 1E8Z
  • Likely Quarternary Molecular Structure file(s) for 1E8Z
  • Structure Factors (250 Kb)
  • Retrieve 1E8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E8Z from S2C, [Save to disk]
  • Re-refined 1e8z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1E8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E8Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1E8Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e8za3, region A:144-322 [Jmol] [rasmolscript] [script source]
        - Domain d1e8za2, region A:357-522 [Jmol] [rasmolscript] [script source]
        - Domain d1e8za1, region A:525-725 [Jmol] [rasmolscript] [script source]
        - Domain d1e8za4, region A:726-1092 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e8z] [1e8z_A]
  • SWISS-PROT database: [P48736]
  • Domain organization of [PK3CG_HUMAN] by SWISSPFAM
  • Domains found in 1E8Z: [PI3K_C2] [PI3K_rbd] [PI3Ka] [PI3Kc ] by SMART
  • Other resources with information on 1E8Z
  • Community annotation for 1E8Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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