1E9M Iron-Sulfur Protein date Oct 24, 2000
title Ferredoxin Vi From Rhodobacter Capsulatus
authors G.Sainz, J.Armengaud, V.Stojanoff, N.Sanishvili, Y.Jouanneau, S.L
compound source
Molecule: Ferredoxin Vi
Chain: A
Engineered: Yes
Organism_scientific: Rhodobacter Capsulatus
Organism_taxid: 1061
Strain: B10
Gene: Fdxe
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Paj66
Expression_system_gene: Fdxe
symmetry Space Group: P 21 21 21
R_factor 0.196 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.340 49.030 54.910 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.07 Å
ligand FES enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceCrystallization and preliminary X-ray diffraction analysis of a [2Fe-2S] ferredoxin (FdVI) from Rhodobacter capsulatus., Armengaud J, Sainz G, Jouanneau Y, Sieker LC, Acta Crystallogr D Biol Crystallogr 2001 Feb;57(Pt 2):301-3. PMID:11173487
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1e9m.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 1E9M
  • CSU: Contacts of Structural Units for 1E9M
  • Likely Quarternary Molecular Structure file(s) for 1E9M
  • Retrieve 1E9M in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1E9M from S2C, [Save to disk]
  • View 1E9M in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1E9M
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1E9M, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e9ma_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1e9m from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1e9m_A] [1e9m]
  • SWISS-PROT database: [P80306]
  • Domain organization of [FER6_RHOCA] by SWISSPFAM
  • Other resources with information on 1E9M
  • Community annotation for 1E9M at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science