1ED1 Viral Protein date Jan 26, 2000
title Crystal Structure Of Simian Immunodeficiency Virus Matrix An Ma) At 100k.
authors Z.Rao, A.Belyaev, E.Fry, P.Roy, I.M.Jones, D.I.Stuart
compound source
Molecule: Gag Polyprotein
Chain: A
Synonym: Siv Ma
Engineered: Yes
Other_details: Siv Matrix Antigen
Organism_scientific: Simian Immunodeficiency Virus - Mac
Organism_taxid: 11711
Strain: Mac Bk28
Gene: Gag
Expression_system: Unidentified Baculovirus
Expression_system_taxid: 10469
Expression_system_plasmid: Pulb5002
symmetry Space Group: H 3
R_factor 0.180 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
113.300 113.300 31.900 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.10 Å
ligand IPA enzyme
related structures by homologous chain: 1ECW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of SIV matrix antigen and implications for virus assembly., Rao Z, Belyaev AS, Fry E, Roy P, Jones IM, Stuart DI, Nature 1995 Dec 14;378(6558):743-7. PMID:7501025
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1ed1.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 1ED1
  • CSU: Contacts of Structural Units for 1ED1
  • Likely Quarternary Molecular Structure file(s) for 1ED1
  • Retrieve 1ED1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ED1 from S2C, [Save to disk]
  • View 1ED1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1ED1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ED1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ed1a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ed1] [1ed1_A]
  • SWISS-PROT database: [P05897]
  • Domain organization of [POL_SIVMK] by SWISSPFAM
  • Other resources with information on 1ED1
  • Community annotation for 1ED1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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