1EHI Ligase date Feb 21, 2000
title D-Alanine:D-Lactate Ligase (Lmddl2) Of Vancomycin-Resistant Leuconostoc Mesenteroides
authors A.P.Kuzin, T.Sun, J.Jorczak-Baillass, V.L.Healy, C.T.Walsh, J.R.K
compound source
Molecule: D-Alanine:D-Lactate Ligase
Chain: A, B
Synonym: Lmddl2
Ec: 6.3.2.4
Engineered: Yes
Organism_scientific: Leuconostoc Mesenteroides
Organism_taxid: 1245
Atcc: 8293
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5a And Bl21(De3)
Expression_system_plasmid: Plmddl2
symmetry Space Group: C 1 2 1
R_factor 0.184 R_Free 0.257
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.200 90.800 82.100 90.00 92.10 90.00
method X-Ray Diffractionresolution 2.38 Å
ligand ADP, MG, PHY enzyme Ligase E.C.6.3.2.4 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEnzymes of vancomycin resistance: the structure of D-alanine-D-lactate ligase of naturally resistant Leuconostoc mesenteroides., Kuzin AP, Sun T, Jorczak-Baillass J, Healy VL, Walsh CT, Knox JR, Structure Fold Des 2000 May 15;8(5):463-70. PMID:10801495
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (1ehi.pdb1.gz) 117 Kb
  • LPC: Ligand-Protein Contacts for 1EHI
  • CSU: Contacts of Structural Units for 1EHI
  • Likely Quarternary Molecular Structure file(s) for 1EHI
  • Retrieve 1EHI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1EHI from S2C, [Save to disk]
  • View 1EHI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1EHI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1EHI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ehia2, region A:135-362 [Jmol] [rasmolscript] [script source]
        - Domain d1ehia1, region A:3-134 [Jmol] [rasmolscript] [script source]
        - Domain d1ehib1, region B:402-534 [Jmol] [rasmolscript] [script source]
        - Domain d1ehib2, region B:535-770 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ehi_B] [1ehi_A] [1ehi]
  • SWISS-PROT database: [Q03ZI1] [P71454]
  • Domain organization of [DDL_LEUMM] [P71454_LEUME] by SWISSPFAM
  • Other resources with information on 1EHI
  • Community annotation for 1EHI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science