1ESK Viral Protein date Apr 10, 2000
title Solution Structure Of Ncp7 From Hiv-1
authors N.Morellet, H.Demene, V.Teilleux, T.Huynh-Dinh, H.De Rocquigny, M C.Fournie-Zaluski, B.P.Roques
compound source
Molecule: Gag Polyprotein
Chain: A
Fragment: Residues 12-53
Synonym: Nucleocapsid Protein Ncp7
Engineered: Yes
 Synthetic: Yes
Other_details: The Protein Was Chemically Synthesized. The Is Naturally Found In Human Immunodeficiency Virus Type 1 (
methodSolution NMR
ligand ZN enzyme
related structures by homologous chain: 1BJ6, 1Q3Y
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (103 Kb) [Save to disk]
  • Biological Unit Coordinates (1esk.pdb1.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 1ESK
  • CSU: Contacts of Structural Units for 1ESK
  • Original NMR restraints for 1ESK from PDB
  • Retrieve 1ESK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1ESK from S2C, [Save to disk]
    • View 1ESK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1ESK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1ESK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1eska_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1esk_A] [1esk]
  • SWISS-PROT database: [P04585]
  • Domain organization of [POL_HV1H2] by SWISSPFAM
  • Domain found in 1ESK: [ZnF_C2HC ] by SMART
    • Other resources with information on 1ESK
  • Community annotation for 1ESK at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1ESK from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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