1F2V CRYSTAL STRUCTURE ANALYSIS OF PRECORRIN-8X METHYLMUTASE OF AEROBIC VITAMIN B12 SYNTHESIS date
authors Shipman, L.W., Li, D., Roessner, C.A., Scott, A.I., Sacchettini, J.C.
compound source
symmetry
R_factor
R_Free 0.2360000
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.10
related structures by homologous chain: 1I1H
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of precorrin-8x methyl mutase., Shipman LW, Li D, Roessner CA, Scott AI, Sacchettini JC, Structure (Camb) 2001 Jul 3;9(7):587-96. PMID:11470433
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1f2v.pdb1.gz) 71 Kb
  • CSU: Contacts of Structural Units for 1F2V
  • Likely Quarternary Molecular Structure file(s) for 1F2V
  • Structure Factors (112 Kb)
  • Retrieve 1F2V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1F2V from S2C, [Save to disk]
  • Re-refined 1f2v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1F2V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1F2V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1F2V, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1f2va_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1f2v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1f2v] [1f2v_A]
  • SWISS-PROT database: [P21638]
  • Domain organization of [COBH_PSEDE] by SWISSPFAM
  • Other resources with information on 1F2V
  • Community annotation for 1F2V at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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