1F5N	Signaling Protein	date	Jun 15, 2000
title	Human Guanylate Binding Protein-1 In Complex With The Gtp An Gmppnp.
authors	B.Prakash, L.Renault, G.J.K.Praefcke, C.Herrmann, A.Wittinghofer
compound		source
Molecule: Interferon-Induced Guanylate-Binding Protein 1 Chain: A Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pqe9
symmetry	Space Group: C 1 2 1	R_factor 0.226 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 161.228 42.652 91.544 90.00 100.19 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	GNP, MG	enzyme
related structures	by homologous chain: 1DG3
Gene Ontology	Chain Function Process Component A
Primary reference	Triphosphate structure of guanylate-binding protein 1 and implications for nucleotide binding and GTPase mechanism., Prakash B, Renault L, Praefcke GJ, Herrmann C, Wittinghofer A, EMBO J 2000 Sep 1;19(17):4555-64. PMID:10970849

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk] Biological Unit Coordinates (1f5n.pdb1.gz) 100 Kb LPC: Ligand-Protein Contacts for 1F5N CSU: Contacts of Structural Units for 1F5N Likely Quarternary Molecular Structure file(s) for 1F5N Retrieve 1F5N in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1F5N from S2C, [Save to disk]

View 1F5N in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1F5N

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1F5N, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1f5na1, region A:284-583 [Jmol] [rasmolscript] [script source]     - Domain d1f5na2, region A:7-283 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1f5n] [1f5n_A] SWISS-PROT database: [P32455] Domain organization of [GBP1_HUMAN] by SWISSPFAM

Other resources with information on 1F5N

Community annotation for 1F5N at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---