1FF5 STRUCTURE OF E-CADHERIN DOUBLE DOMAIN date
authors Pertz, O., Bozic, D., Koch, A.W., Fauser, C., Brancaccio, A., Engel, J.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.93
ligand CA enzyme
related structures by homologous chain: 1EDH, 1SUH
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA new crystal structure, Ca2+ dependence and mutational analysis reveal molecular details of E-cadherin homoassociation., Pertz O, Bozic D, Koch AW, Fauser C, Brancaccio A, Engel J, EMBO J 1999 Apr 1;18(7):1738-47. PMID:10202138
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (1ff5.pdb1.gz) 73 Kb
  • LPC: Ligand-Protein Contacts for 1FF5
  • CSU: Contacts of Structural Units for 1FF5
  • Likely Quarternary Molecular Structure file(s) for 1FF5
  • Retrieve 1FF5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FF5 from S2C, [Save to disk]
    • View 1FF5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FF5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FF5, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ff5a1, region A:-1-101 [Jmol] [rasmolscript] [script source]
        - Domain d1ff5a2, region A:102-218 [Jmol] [rasmolscript] [script source]
        - Domain d1ff5b1, region B:-1-101 [Jmol] [rasmolscript] [script source]
        - Domain d1ff5b2, region B:102-218 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ff5_A] [1ff5] [1ff5_B]
  • SWISS-PROT database: [P09803]
  • Domain organization of [CADH1_MOUSE] by SWISSPFAM
  • Domain found in 1FF5: [CA ] by SMART
    • Other resources with information on 1FF5
  • Community annotation for 1FF5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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