1FFZ Ribosome date Jul 26, 2000
title Large Ribosomal Subunit Complexed With R(Cc)-Da-Puromycin
authors P.Nissen, J.Hansen, N.Ban, P.B.Moore, T.A.Steitz
compound source
Molecule: 23s Ribosomal Rna
Chain: A
Fragment: Domain V Of 23s Ribosomal Rna
Other_details: Part Of The 50s Large Ribosomal Subunit
 Organism_scientific: Haloarcula Marismortui
Organism_taxid: 2238
Other_details: Cultured Cells

Molecule: R(Pcpc)-D(Pa)-R(P(Pu))
Chain: B
Engineered: Yes
Other_details: An Analog Of A-Site Aminoacyl-Trna And P- Site Peptidyl-Trna As They Are Covalently Linked By The Tetrahedral Carbonyl Carbon Intermediate In Peptide Bond Formation. Contains Pu, Puromycin-N-Aminophosphonic Acid
Synthetic: Yes
symmetry Space Group: C 2 2 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
212.000 300.000 574.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand PU enzyme
Primary referenceThe structural basis of ribosome activity in peptide bond synthesis., Nissen P, Hansen J, Ban N, Moore PB, Steitz TA, Science 2000 Aug 11;289(5481):920-30. PMID:10937990
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (1ffz.pdb1.gz) 179 Kb
  • LPC: Ligand-Protein Contacts for 1FFZ
  • CSU: Contacts of Structural Units for 1FFZ
  • Likely Quarternary Molecular Structure file(s) for 1FFZ
  • Structure Factors (5000 Kb)
  • Retrieve 1FFZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FFZ from S2C, [Save to disk]
    • View 1FFZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FFZ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FFZ, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ffza_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1ffz from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ffz_A] [1ffz_B] [1ffz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1FFZ
  • Community annotation for 1FFZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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