1FKA Ribosome date Aug 09, 2000
title Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution
authors F.Schluenzen, A.Tocilj, R.Zarivach, J.Harms, M.Gluehmann, D.Janell, A.Bashan, H.Bartels, I.Agmon, F.Franceschi, A.Yonath
compound source
Molecule: 16s Ribosomal Rna
Chain: A
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S2
Chain: B

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S3
Chain: C

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S4
Chain: D

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S5
Chain: E

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S6
Chain: F

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S7
Chain: G

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S8
Chain: H

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S9
Chain: I

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S10
Chain: J

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S11
Chain: K

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S12
Chain: L

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S13
Chain: M

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S14
Chain: N

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S15
Chain: O

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S16
Chain: P

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S17
Chain: Q

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S18
Chain: R

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S19
Chain: S

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S20
Chain: T

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: P 41 21 2
R_factor 0.304 R_Free 0.305
crystal
cell
length a length b length c angle alpha angle beta angle gamma
406.300 406.300 173.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand WO2 enzyme
note 1FKA (Molecule of the Month:pdb10)
Gene
Ontology
ChainFunctionProcessComponent
D


E


F


G


H


O


R


S


Primary referenceStructure of functionally activated small ribosomal subunit at 3.3 angstroms resolution., Schluenzen F, Tocilj A, Zarivach R, Harms J, Gluehmann M, Janell D, Bashan A, Bartels H, Agmon I, Franceschi F, Yonath A, Cell 2000 Sep 1;102(5):615-23. PMID:11007480
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (596 Kb) [Save to disk]
  • Biological Unit Coordinates (1fka.pdb1.gz) 588 Kb
  • LPC: Ligand-Protein Contacts for 1FKA
  • CSU: Contacts of Structural Units for 1FKA
  • Likely Quarternary Molecular Structure file(s) for 1FKA
  • Retrieve 1FKA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FKA from S2C, [Save to disk]
  • View 1FKA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FKA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1FKA, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fkaa_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fkab_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1fkac_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1fkad_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1fkae_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1fkaf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1fkag_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1fkah_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1fkai_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1fkaj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1fkak_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1fkal_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1fkam_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1fkan_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1fkao_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1fkap_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1fkaq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1fkar_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1fkas_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1fkat_, region T [Jmol] [rasmolscript] [script source]
  • Fold representative 1fka from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fka_B] [1fka_M] [1fka_N] [1fka_P] [1fka_H] [1fka_G] [1fka_J] [1fka_K] [1fka_C] [1fka_Q] [1fka_D] [1fka_S] [1fka] [1fka_L] [1fka_F] [1fka_I] [1fka_O] [1fka_R] [1fka_A] [1fka_T] [1fka_E]
  • SWISS-PROT database: [Q5SJ76] [Q5SLQ0] [Q5SHP2] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2]
  • Domain organization of [RS15_THET8] [RS18_THET8] [RS19_THET8] [RS4_THET8] [RS5_THET8] [RS6_THET8] [RS7_THET8] [RS8_THET8] by SWISSPFAM
  • Domains found in 1FKA: [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 1FKA
  • Community annotation for 1FKA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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