1FO3 Hydrolase date Aug 24, 2000
title Crystal Structure Of Human Class I Alpha1,2-Mannosidase In Complex With Kifunensine
authors F.Vallee, K.Karaveg, K.W.Moremen, A.Herscovics, P.L.Howell
compound source
Molecule: Alpha1,2-Mannosidase
Chain: A
Fragment: C-Terminal Catalytic Domain
Ec: 3.2.1.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
symmetry Space Group: P 31 2 1
R_factor 0.218 R_Free 0.241
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.975 95.975 137.028 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.75 Å
ligand CA, KIF, SO4 enzyme Hydrolase E.C.3.2.1.24 BRENDA
related structures by homologous chain: 1FMI, 1X9D
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for catalysis and inhibition of N-glycan processing class I alpha 1,2-mannosidases., Vallee F, Karaveg K, Herscovics A, Moremen KW, Howell PL, J Biol Chem 2000 Dec 29;275(52):41287-98. PMID:10995765
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1fo3.pdb1.gz) 83 Kb
  • LPC: Ligand-Protein Contacts for 1FO3
  • CSU: Contacts of Structural Units for 1FO3
  • Likely Quarternary Molecular Structure file(s) for 1FO3
  • Retrieve 1FO3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FO3 from S2C, [Save to disk]
  • View 1FO3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FO3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FO3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fo3a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fo3_A] [1fo3]
  • SWISS-PROT database: [Q9UKM7]
  • Domain organization of [MA1B1_HUMAN] by SWISSPFAM
  • Other resources with information on 1FO3
  • Community annotation for 1FO3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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