1FO4 Oxidoreductase date Aug 24, 2000
title Crystal Structure Of Xanthine Dehydrogenase Isolated From Bo
authors C.Enroth, B.T.Eger, K.Okamoto, T.Nishino, T.Nishino, E.F.Pai
compound source
Molecule: Xanthine Dehydrogenase
Chain: A, B
Synonym: Xd
Ec: 1.1.1.204
Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Secretion: Milk
symmetry Space Group: C 1 2 1
R_factor 0.198 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
169.451 124.493 148.327 90.00 90.94 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand CA, FAD, FES, GOL, MOS, MTE, SAL BindingDB enzyme Oxidoreductase E.C.1.1.1.204 BRENDA
note 1FO4 (Molecule of the Month:pdb117)
related structures by homologous chain: 1FIQ, 1VDV
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


  • Primary referenceCrystal structures of bovine milk xanthine dehydrogenase and xanthine oxidase: structure-based mechanism of conversion., Enroth C, Eger BT, Okamoto K, Nishino T, Nishino T, Pai EF, Proc Natl Acad Sci U S A 2000 Sep 26;97(20):10723-8. PMID:11005854
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (447 Kb) [Save to disk]
  • Biological Unit Coordinates (1fo4.pdb1.gz) 439 Kb
  • LPC: Ligand-Protein Contacts for 1FO4
  • CSU: Contacts of Structural Units for 1FO4
  • Likely Quarternary Molecular Structure file(s) for 1FO4
  • Retrieve 1FO4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FO4 from S2C, [Save to disk]
  • View 1FO4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FO4
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FO4, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fo4a6, region A:192-414 [Jmol] [rasmolscript] [script source]
        - Domain d1fo4a2, region A:3-92 [Jmol] [rasmolscript] [script source]
        - Domain d1fo4a4, region A:415-531 [Jmol] [rasmolscript] [script source]
        - Domain d1fo4a3, region A:537-694 [Jmol] [rasmolscript] [script source]
        - Domain d1fo4a5, region A:695-1332 [Jmol] [rasmolscript] [script source]
        - Domain d1fo4a1, region A:93-165 [Jmol] [rasmolscript] [script source]
        - Domain d1fo4b6, region B:192-414 [Jmol] [rasmolscript] [script source]
        - Domain d1fo4b2, region B:3-92 [Jmol] [rasmolscript] [script source]
        - Domain d1fo4b4, region B:415-528 [Jmol] [rasmolscript] [script source]
        - Domain d1fo4b3, region B:537-694 [Jmol] [rasmolscript] [script source]
        - Domain d1fo4b5, region B:695-1332 [Jmol] [rasmolscript] [script source]
        - Domain d1fo4b1, region B:93-165 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fo4] [1fo4_B] [1fo4_A]
  • SWISS-PROT database: [P80457]
  • Domain organization of [XDH_BOVIN] by SWISSPFAM
  • Domains found in 1FO4: [Ald_Xan_dh_C] [CO_deh_flav_C ] by SMART
  • Other resources with information on 1FO4
  • Community annotation for 1FO4 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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