1FWO Hydrolase date Sep 24, 2000
title The Solution Structure Of A 35-Residue Fragment From The Granulinepithelin-Like Subdomain Of Rice Oryzain Beta (Rob (C398s,C399s,C407s,C413s))
authors D.Tolkatchev, P.Xu, F.Ni
compound source
Molecule: Oryzain Beta Chain
Chain: A
Fragment: C-Terminal Granulinepithelin-Like Extension (Res 416);
Ec: 3.4.22.-
Engineered: Yes
Mutation: Yes
 Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Naturally Occurs In Oryza Sativa (Rice).
methodSolution NMR
ligand
enzyme Hydrolase E.C.3.4.22 BRENDA
note 1FWO is a representative structure
Primary referenceA peptide derived from the C-terminal part of a plant cysteine protease folds into a stack of two beta-hairpins, a scaffold present in the emerging family of granulin-like growth factors., Tolkatchev D, Xu P, Ni F, J Pept Res 2001 Mar;57(3):227-33. PMID:11298924
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (1fwo.pdb1.gz) 8 Kb
  • CSU: Contacts of Structural Units for 1FWO
  • Original NMR restraints for 1FWO from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1FWO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FWO from S2C, [Save to disk]
    • View 1FWO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FWO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FWO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fwoa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fwo_A] [1fwo]
  • SWISS-PROT database: [P25777]
  • Domain organization of [ORYB_ORYSJ] by SWISSPFAM
    • Other resources with information on 1FWO
  • Community annotation for 1FWO at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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