1FYU Sugar Binding Protein date Oct 03, 2000
title Crystal Structure Of Erythrina Corallodendron Lectin In Hexa Crystal Form
authors S.Elgavish, B.Shaanan
compound source
Molecule: Lectin
Chain: A, B
 Organism_scientific: Erythrina Corallodendron
Organism_taxid: 3843
symmetry Space Group: P 65
R_factor 0.173 R_Free 0.202
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.850 135.850 82.630 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.60 Å
ligand CA, GAL, GLC, MN enzyme
related structures by homologous chain: 1SFY
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceChemical characteristics of dimer interfaces in the legume lectin family., Elgavish S, Shaanan B, Protein Sci 2001 Apr;10(4):753-61. PMID:11274466
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (1fyu.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 1FYU
  • CSU: Contacts of Structural Units for 1FYU
  • Likely Quarternary Molecular Structure file(s) for 1FYU
  • Retrieve 1FYU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FYU from S2C, [Save to disk]
    • View 1FYU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1FYU
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FYU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fyua_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1fyub_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fyu_B] [1fyu] [1fyu_A]
  • SWISS-PROT database: [P16404]
  • Domain organization of [LEC_ERYCO] by SWISSPFAM
    • Other resources with information on 1FYU
  • Community annotation for 1FYU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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