1FYW Signaling Protein date Oct 03, 2000
title Crystal Structure Of The Tir Domain Of Human Tlr2
authors Y.Xu, X.Tao, B.Shen, T.Horng, R.Medzhitov, J.L.Manley, L.Tong, Nort Structural Genomics Consortium (Nesg)
compound source
Molecule: Toll-Like Receptor 2
Chain: A
Fragment: Tir Domain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 62 2 2
R_factor 0.244 R_Free 0.274
crystal
cell
length a length b length c angle alpha angle beta angle gamma
121.200 121.200 91.600 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.00 Å
ligand CAS, MSE enzyme
related structures by homologous chain: 1FYX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for signal transduction by the Toll/interleukin-1 receptor domains., Xu Y, Tao X, Shen B, Horng T, Medzhitov R, Manley JL, Tong L, Nature 2000 Nov 2;408(6808):111-5. PMID:11081518
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1fyw.pdb1.gz) 27 Kb
  • Biological Unit Coordinates (1fyw.pdb2.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1FYW
  • CSU: Contacts of Structural Units for 1FYW
  • Likely Quarternary Molecular Structure file(s) for 1FYW
  • Retrieve 1FYW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1FYW from S2C, [Save to disk]
  • View 1FYW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1FYW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1FYW, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1fywa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1fyw_A] [1fyw]
  • SWISS-PROT database: [O60603]
  • Domain organization of [TLR2_HUMAN] by SWISSPFAM
  • Domain found in 1FYW: [TIR ] by SMART
  • Other resources with information on 1FYW
  • Community annotation for 1FYW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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