1FZD	Blood Coagulation	date	Jun 22, 1998
title	Structure Of Recombinant Alphaec Domain From Human Fibrinoge
authors	G.Spraggon, D.Applegate, S.J.Everse, J.Z.Zhang, L.Veerapandian, R.F.Doolittle, G.Grieninger
compound		source
Molecule: Fibrinogen-420 Chain: A, B, C, D, E, F, G, H Fragment: Alpha-Ec Domain Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Organ: Blood Expression_system: Pichia Pastoris Expression_system_taxid: 4922
symmetry	Space Group: P 1	R_factor 0.195 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 71.250 105.180 71.140 104.60 108.95 71.47
method	X-Ray Diffraction	resolution	2.10 Å
ligand	CA, MAN, NAG, NDG	enzyme
Gene Ontology	Chain Function Process Component F, A, E, B, H, C, D, G
Primary reference	Crystal structure of a recombinant alphaEC domain from human fibrinogen-420., Spraggon G, Applegate D, Everse SJ, Zhang JZ, Veerapandian L, Redman C, Doolittle RF, Grieninger G, Proc Natl Acad Sci U S A 1998 Aug 4;95(16):9099-104. PMID:9689040

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk] Biological Unit Coordinates (1fzd.pdb1.gz) 139 Kb Biological Unit Coordinates (1fzd.pdb2.gz) 135 Kb LPC: Ligand-Protein Contacts for 1FZD CSU: Contacts of Structural Units for 1FZD Likely Quarternary Molecular Structure file(s) for 1FZD Retrieve 1FZD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1FZD from S2C, [Save to disk]

View 1FZD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1FZD

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1FZD, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1fzda_, region A [Jmol] [rasmolscript] [script source]     - Domain d1fzdb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1fzdc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1fzdd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1fzde_, region E [Jmol] [rasmolscript] [script source]     - Domain d1fzdf_, region F [Jmol] [rasmolscript] [script source]     - Domain d1fzdg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1fzdh_, region H [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1fzd] [1fzd_E] [1fzd_F] [1fzd_A] [1fzd_G] [1fzd_D] [1fzd_B] [1fzd_H] [1fzd_C] SWISS-PROT database: [P02671] Domain organization of [FIBA_HUMAN] by SWISSPFAM Domain found in 1FZD: [FBG ] by SMART

Other resources with information on 1FZD

Community annotation for 1FZD at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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