1G5Y	Transcription	date	Nov 02, 2000
title	The 2.0 Angstrom Resolution Crystal Structure Of The Rxralph Binding Domain Tetramer In The Presence Of A Non-Activating Acid Isomer.
authors	R.T.Gampe Jr., V.G.Montana, M.H.Lambert, G.B.Wisely, M.V.Milburn
compound		source
Molecule: Retinoic Acid Receptor Rxr-Alpha Chain: A, B, C, D Fragment: Ligand Binding Domain (Residues 225 - 462) Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_plasmid: Pet14
symmetry	Space Group: P 1 21 1	R_factor 0.231 R_Free 0.254
crystal cell	length a length b length c angle alpha angle beta angle gamma 51.052 99.701 96.281 90.00 96.70 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	REA BindingDB	enzyme
related structures	by homologous chain: 1FM9, 1MVC
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural basis for autorepression of retinoid X receptor by tetramer formation and the AF-2 helix., Gampe RT Jr, Montana VG, Lambert MH, Wisely GB, Milburn MV, Xu HE, Genes Dev 2000 Sep 1;14(17):2229-41. PMID:10970886

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (156 Kb) [Save to disk] Biological Unit Coordinates (1g5y.pdb1.gz) 150 Kb LPC: Ligand-Protein Contacts for 1G5Y CSU: Contacts of Structural Units for 1G5Y Likely Quarternary Molecular Structure file(s) for 1G5Y Retrieve 1G5Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1G5Y from S2C, [Save to disk]

View 1G5Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1G5Y

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1G5Y, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1g5ya_, region A [Jmol] [rasmolscript] [script source]     - Domain d1g5yb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1g5yc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1g5yd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1g5y_D] [1g5y] [1g5y_C] [1g5y_A] [1g5y_B] SWISS-PROT database: [P19793] Domain organization of [RXRA_HUMAN] by SWISSPFAM Domain found in 1G5Y: [HOLI ] by SMART

Other resources with information on 1G5Y

Community annotation for 1G5Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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