1G8C Antimicrobial Protein date Nov 16, 2000
title Structure Of The Bovine Antimicrobial Peptide Indolicidin Bo Sodium Dodecyl Sulfate Micelles
authors A.Rozek, C.L.Friedrich, R.E.Hancock
compound source
Molecule: Indolicidin
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Occurs Naturally In Bos Taurus (Bovine) Neutrophils. The Se Naturally Amidated At C-Terminus.
methodSolution NMR
ligand NH2 enzyme
Primary referenceStructure of the bovine antimicrobial peptide indolicidin bound to dodecylphosphocholine and sodium dodecyl sulfate micelles., Rozek A, Friedrich CL, Hancock RE, Biochemistry 2000 Dec 26;39(51):15765-74. PMID:11123901
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (1g8c.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 1G8C
  • CSU: Contacts of Structural Units for 1G8C
  • Original NMR restraints for 1G8C from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1G8C in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1G8C from S2C, [Save to disk]
    • View 1G8C in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1G8C
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1G8C, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1g8ca_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1g8c_A] [1g8c]
  • SWISS-PROT database: [P33046]
  • Belongs to the cathelicidin (cathelicidin) family according to TCDB.
  • Domain organization of [CTHL4_BOVIN] by SWISSPFAM
    • Other resources with information on 1G8C
  • Community annotation for 1G8C at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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