1GAV	BACTERIOPHAGE GA PROTEIN CAPSID	date
authors	Tars, K., Bundule, M., Liljas, L.
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.40
Gene Ontology	Chain Function Process Component S, a, T, N, K, 7, d, Y, E, 2, Z, 1, g, e, J, W, B, H, c, b, D, I, G, U, F, V, Q, h, M, 0, C, f, L, i, A, 6, O, 3, X, P, 9, 8, 4, R, 5
Primary reference	The crystal structure of bacteriophage GA and a comparison of bacteriophages belonging to the major groups of Escherichia coli leviviruses., Tars K, Bundule M, Fridborg K, Liljas L, J Mol Biol 1997 Sep 5;271(5):759-73. PMID:9299325

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (876 Kb) [Save to disk] Biological Unit Coordinates (1gav.pdb1.gz) 3464 Kb CSU: Contacts of Structural Units for 1GAV Likely Quarternary Molecular Structure file(s) for 1GAV Structure Factors (1163 Kb) Retrieve 1GAV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1GAV from S2C, [Save to disk] Re-refined 1gav structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1GAV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GAV

VIPERdb: visual, structural and computational analysis of 1GAV Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1GAV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1gav0_, region 0 [Jmol] [rasmolscript] [script source]     - Domain d1gav1_, region 1 [Jmol] [rasmolscript] [script source]     - Domain d1gav2_, region 2 [Jmol] [rasmolscript] [script source]     - Domain d1gav3_, region 3 [Jmol] [rasmolscript] [script source]     - Domain d1gav4_, region 4 [Jmol] [rasmolscript] [script source]     - Domain d1gav5_, region 5 [Jmol] [rasmolscript] [script source]     - Domain d1gav6_, region 6 [Jmol] [rasmolscript] [script source]     - Domain d1gav7_, region 7 [Jmol] [rasmolscript] [script source]     - Domain d1gav8_, region 8 [Jmol] [rasmolscript] [script source]     - Domain d1gav9_, region 9 [Jmol] [rasmolscript] [script source]     - Domain d1gava_, region A [Jmol] [rasmolscript] [script source]     - Domain d1gavb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1gavc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1gavd_, region D [Jmol] [rasmolscript] [script source]     - Domain d1gave_, region E [Jmol] [rasmolscript] [script source]     - Domain d1gavf_, region F [Jmol] [rasmolscript] [script source]     - Domain d1gavg_, region G [Jmol] [rasmolscript] [script source]     - Domain d1gavh_, region H [Jmol] [rasmolscript] [script source]     - Domain d1gavi_, region I [Jmol] [rasmolscript] [script source]     - Domain d1gavj_, region J [Jmol] [rasmolscript] [script source]     - Domain d1gavk_, region K [Jmol] [rasmolscript] [script source]     - Domain d1gavl_, region L [Jmol] [rasmolscript] [script source]     - Domain d1gavm_, region M [Jmol] [rasmolscript] [script source]     - Domain d1gavn_, region N [Jmol] [rasmolscript] [script source]     - Domain d1gavo_, region O [Jmol] [rasmolscript] [script source]     - Domain d1gavp_, region P [Jmol] [rasmolscript] [script source]     - Domain d1gavq_, region Q [Jmol] [rasmolscript] [script source]     - Domain d1gavr_, region R [Jmol] [rasmolscript] [script source]     - Domain d1gavs_, region S [Jmol] [rasmolscript] [script source]     - Domain d1gavt_, region T [Jmol] [rasmolscript] [script source]     - Domain d1gavu_, region U [Jmol] [rasmolscript] [script source]     - Domain d1gavv_, region V [Jmol] [rasmolscript] [script source]     - Domain d1gavw_, region W [Jmol] [rasmolscript] [script source]     - Domain d1gavx_, region X [Jmol] [rasmolscript] [script source]     - Domain d1gavy_, region Y [Jmol] [rasmolscript] [script source]     - Domain d1gavz_, region Z [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gav_N] [1gav_Z] [1gav_O] [1gav_b] [1gav_V] [1gav_f] [1gav_5] [1gav_B] [1gav_J] [1gav_K] [1gav_d] [1gav_A] [1gav_i] [1gav_P] [1gav_U] [1gav_6] [1gav_F] [1gav_g] [1gav_X] [1gav_h] [1gav_1] [1gav_0] [1gav_2] [1gav_G] [1gav_Q] [1gav_a] [1gav_e] [1gav_W] [1gav_8] [1gav_4] [1gav_3] [1gav_Y] [1gav_D] [1gav_I] [1gav_M] [1gav_L] [1gav_S] [1gav_C] [1gav_H] [1gav_E] [1gav_c] [1gav_7] [1gav] [1gav_R] [1gav_T] [1gav_9] SWISS-PROT database: [P07234] Domain organization of [COAT_BPGA] by SWISSPFAM

Other resources with information on 1GAV

Community annotation for 1GAV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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