OCA Atlas for 1GJX

1GJX

Oxidoreductase

date

Aug 03, 2001

title

Solution Structure Of The Lipoyl Domain Of The Chimeric Dihydrolipoyl Dehydrogenase P64k From Neisseria Meningitidis

authors

K.Tozawa, R.W.Broadhurst, A.R.C.Raine, C.Fuller, A.Alvarez, G.Guillen, G.Padron, R.N.Perham

compound

source

Molecule: Pyruvate Dehydrogenase
Chain: A
Fragment: Lipoyl Domain Residues 2-82
Synonym: Lipoamide Dehydrogenase, E3 Component
Ec: 1.8.1.4
Engineered: Yes

Organism_scientific: Neisseria Meningitidis
Organism_taxid: 487
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1-Blue
Expression_system_plasmid: Pm-143

method

Solution NMR

ligand

enzyme

Oxidoreductase E.C.1.8.1.4 BRENDA

Gene
Ontology

Chain	Function	Process	Component
A

Primary reference

Solution structure of the lipoyl domain of the chimeric dihydrolipoyl dehydrogenase P64K from Neisseria meningitidis., Tozawa K, Broadhurst RW, Raine AR, Fuller C, Alvarez A, Guillen G, Padron G, Perham RN, Eur J Biochem 2001 Sep;268(18):4908-17. PMID:11559360

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (344 Kb) [Save to disk]

CSU: Contacts of Structural Units for 1GJX

Original NMR restraints for 1GJX from PDB

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

NMR Restraints Grid from BioMagResBank (BMRB)

Retrieve 1GJX in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1GJX from S2C, [Save to disk]

View 1GJX in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1GJX

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1GJX, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1gjxa_, region A [Jmol] [rasmolscript] [script source]

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1gjx] [1gjx_A]

SWISS-PROT database: [Q9JZ09]

Domain organization of [Q9JZ09_NEIMB] by SWISSPFAM

Other resources with information on 1GJX

Community annotation for 1GJX at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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