1GLI DEOXYHEMOGLOBIN T38W (ALPHA CHAINS), V1G (ALPHA AND BETA CHAINS) date
authors Fermi, G., Vallone, B.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand HEM, PO4 enzyme
related structures by homologous chain: 1FN3, 1RVW
Gene
Ontology
ChainFunctionProcessComponent
A, C
  • peroxidase activity


  • D, B
  • peroxidase activity


  • Primary referenceProbing the alpha 1 beta 2 interface of human hemoglobin by mutagenesis. Role of the FG-C contact regions., Vallone B, Bellelli A, Miele AE, Brunori M, Fermi G, J Biol Chem 1996 May 24;271(21):12472-80. PMID:8647854
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (1gli.pdb1.gz) 93 Kb
  • LPC: Ligand-Protein Contacts for 1GLI
  • CSU: Contacts of Structural Units for 1GLI
  • Likely Quarternary Molecular Structure file(s) for 1GLI
  • Structure Factors (123 Kb)
  • Retrieve 1GLI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GLI from S2C, [Save to disk]
  • Re-refined 1gli structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GLI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GLI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GLI, from MSDmotif at EBI
  • Genome occurence of 1GLI's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1glia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1glib_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1glic_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1glid_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gli_C] [1gli] [1gli_A] [1gli_B] [1gli_D]
  • SWISS-PROT database: [P69905] [P68871]
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Belongs to the pore-forming globin (globin) family according to TCDB.
  • Domain organization of [HBA_HUMAN] [HBB_HUMAN] by SWISSPFAM
  • Other resources with information on 1GLI
  • Community annotation for 1GLI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1GLI from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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