1GM0 Transport Protein date Sep 05, 2001
title A Form Of The Pheromone-Binding Protein From Bombyx Mori
authors R.Horst, F.Damberger, P.Guntert, P.Luginbuhl, L.Nikonova, G.Peng, K.Wuthrich
compound source
Molecule: Pheromone-Binding Protein
Chain: A
Engineered: Yes
 Organism_scientific: Bombyx Mori
Organism_common: Silkworm Moth
Organism_taxid: 7091
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
related structures by homologous chain: 1DQE, 1QWV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR structure reveals intramolecular regulation mechanism for pheromone binding and release., Horst R, Damberger F, Luginbuhl P, Guntert P, Peng G, Nikonova L, Leal WS, Wuthrich K, Proc Natl Acad Sci U S A 2001 Dec 4;98(25):14374-9. PMID:11724947
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (727 Kb) [Save to disk]
  • Biological Unit Coordinates (1gm0.pdb1.gz) 37 Kb
  • CSU: Contacts of Structural Units for 1GM0
  • Original NMR restraints for 1GM0 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1GM0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GM0 from S2C, [Save to disk]
    • View 1GM0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GM0
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GM0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gm0a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gm0] [1gm0_A]
  • SWISS-PROT database: [P34174]
  • Domain organization of [PBP_BOMMO] by SWISSPFAM
  • Domain found in 1GM0: [PhBP ] by SMART
    • Other resources with information on 1GM0
  • Community annotation for 1GM0 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1GM0 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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