1GNM Hydrolase (Acid Protease) date May 04, 1996
title Hiv-1 Protease Mutant With Val 82 Replaced By Asp (V82d) Com With U89360e (Inhibitor)
authors L.Hong, A.Treharne, J.A.Hartsuck, S.Foundling, J.Tang
compound source
Molecule: Hiv-1 Protease
Chain: A, B
Ec: 2.7.7.49
Engineered: Yes
Mutation: Yes
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61
R_factor 0.175 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
63.170 63.170 83.800 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand U0E enzyme Transferase E.C.2.7.7.49 BRENDA
related structures by homologous chain: 1GNO, 4HVP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structures of complexes of a peptidic inhibitor with wild-type and two mutant HIV-1 proteases., Hong L, Treharne A, Hartsuck JA, Foundling S, Tang J, Biochemistry 1996 Aug 20;35(33):10627-33. PMID:8718851
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1gnm.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 1GNM
  • CSU: Contacts of Structural Units for 1GNM
  • Likely Quarternary Molecular Structure file(s) for 1GNM
  • Retrieve 1GNM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GNM from S2C, [Save to disk]
    • View 1GNM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1GNM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1GNM, from MSDmotif at EBI
  • Genome occurence of 1GNM's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gnma_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1gnmb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gnm_A] [1gnm_B] [1gnm]
  • SWISS-PROT database: [P03366]
  • Domain organization of [POL_HV1B1] by SWISSPFAM
    • Other resources with information on 1GNM
  • Community annotation for 1GNM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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