1GOG Oxidoreductase(Oxygen(A)) date Sep 30, 1993
title Novel Thioether Bond Revealed By A 1.7 Angstroms Crystal Str Galactose Oxidase
authors N.Ito, S.E.V.Phillips, P.F.Knowles
compound source
Molecule: Galactose Oxidase
Chain: A
Ec: 1.1.3.9
Engineered: Yes
Organism_scientific: Hypomyces Rosellus
Organism_taxid: 5132
symmetry Space Group: C 1 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
98.000 89.400 86.700 90.00 117.80 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CU, NA enzyme Oxidoreductase E.C.1.1.3.9 BRENDA
related structures by homologous chain: 1GOF, 1GOH
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNovel thioether bond revealed by a 1.7 A crystal structure of galactose oxidase., Ito N, Phillips SE, Stevens C, Ogel ZB, McPherson MJ, Keen JN, Yadav KD, Knowles PF, Nature 1991 Mar 7;350(6313):87-90. PMID:2002850
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (1gog.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 1GOG
  • CSU: Contacts of Structural Units for 1GOG
  • Likely Quarternary Molecular Structure file(s) for 1GOG
  • Structure Factors (460 Kb)
  • Retrieve 1GOG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GOG from S2C, [Save to disk]
  • Re-refined 1gog structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1GOG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GOG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GOG, from MSDmotif at EBI
  • Genome occurence of 1GOG's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gog_2, region 1-150 [Jmol] [rasmolscript] [script source]
        - Domain d1gog_3, region 151-537 [Jmol] [rasmolscript] [script source]
        - Domain d1gog_1, region 538-639 [Jmol] [rasmolscript] [script source]
  • Fold representative 1gog from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gog_A] [1gog]
  • SWISS-PROT database: [Q01745]
  • Domain organization of [GAOA_GIBZE] by SWISSPFAM
  • Domains found in 1GOG: [FA58C] [Kelch ] by SMART
  • Other resources with information on 1GOG
  • Community annotation for 1GOG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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