1GWP Viral Protein date Mar 22, 2002
title Structure Of The N-Terminal Domain Of The Mature Hiv-1 Capsid Protein
authors C.Tang, R.K.Gitti, B.M.Lee, J.Walker, M.F.Summers, S.Yoo, W.I.Sundquist
compound source
Molecule: Gag Polyprotein
Chain: A
Fragment: Amino-Terminal Core Domain Residues 132 - 282
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus Type 1 (New York-5 Isolate);
Organism_taxid: 11698
Strain: Pnl4-3
Cell_line: Clone 12
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
methodSolution NMR
note 1GWP supersedes 1GDS, 1GDY, 1GDZ
related structures by homologous chain: 1E6J
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the N-terminal 283-residue fragment of the immature HIV-1 Gag polyprotein., Tang C, Ndassa Y, Summers MF, Nat Struct Biol. 2002 Jul;9(7):537-43. PMID:12032547
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (791 Kb) [Save to disk]
  • Biological Unit Coordinates (1gwp.pdb1.gz) 40 Kb
  • CSU: Contacts of Structural Units for 1GWP
  • Retrieve 1GWP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1GWP from S2C, [Save to disk]
  • View 1GWP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1GWP
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1GWP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1gwpa_, region A [Jmol] [rasmolscript] [script source]
  • Fold representative 1gwp from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1gwp_A] [1gwp]
  • SWISS-PROT database: [P12497]
  • Domain organization of [POL_HV1N5] by SWISSPFAM
  • Other resources with information on 1GWP
  • Community annotation for 1GWP at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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