1H0R Dehydratase date Jun 27, 2002
title Type II Dehydroquinase From Mycobacterium Tuberculosis Complexed With 2,3-Anhydro-Quinic Acid
authors A.W.Roszak, D.A.Robinson, M.Frederickson, C.Abell, J.R.Coggins, A.J.Lapthorn
compound source
Molecule: 3-Dehydroquinate Dehydratase
Chain: A
Synonym: 3-Dehydroquinase, Type II Dhqase
Ec: 4.2.1.10
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 83332
Strain: H37rv
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector: Pet-15b
Expression_system_plasmid: Mpet
symmetry Space Group: F 2 3
R_factor 0.144 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.879 126.879 126.879 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.1 Å
ligand CL, FA1, GOL, PO4 BindingDB enzyme Lyase E.C.4.2.1.10 BRENDA
note 1H0R (Molecule of the Month:pdb124)
related structures by homologous chain: 2DHQ
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1h0r.pdb1.gz) 297 Kb
  • LPC: Ligand-Protein Contacts for 1H0R
  • CSU: Contacts of Structural Units for 1H0R
  • Likely Quarternary Molecular Structure file(s) for 1H0R
  • Structure Factors (82 Kb)
  • Retrieve 1H0R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1H0R from S2C, [Save to disk]
  • Re-refined 1h0r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1H0R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1H0R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1H0R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1h0ra_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1h0r_A] [1h0r]
  • SWISS-PROT database: [P0A4Z6]
  • Domain organization of [AROQ_MYCTU] by SWISSPFAM
  • Other resources with information on 1H0R
  • Community annotation for 1H0R at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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