OCA Atlas for 1H3H

1H3H	Protein-Binding	date	Sep 03, 2002
title	Structural Basis For Specific Recognition Of An Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal Sh3 Domain
authors	Q.Liu, D.Berry, P.Nash, T.Pawson, C.J.Mcglade, S.S.Li
compound		source
Molecule: Grb2-Related Adaptor Protein 2 Chain: A Fragment: C-Terminal Sh3 Domain, Residues 263-322 Synonym: Gads Protein, Grblg, Grb2l Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Cell: T-Lymphocyte Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-2tk
Molecule: Lymphocyte Cytosolic Protein 2 Chain: B Fragment: Residues 226-235 Synonym: Slp-76 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Paed4
method	Solution NMR
related structures	by homologous chain: 1JOJ
Primary reference	Structural basis for specific binding of the Gads SH3 domain to an RxxK motif-containing SLP-76 peptide: a novel mode of peptide recognition., Liu Q, Berry D, Nash P, Pawson T, McGlade CJ, Li SS, Mol Cell. 2003 Feb;11(2):471-81. PMID:12620234

Data retrieval

Original NMR restraints for 1H3H from PDB

Experimental data, such as chemical shifts, at BioMagResBank (BMRB)

Retrieve 1H3H in mmCIF format [Save to disk]

View 1H3H in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1H3H

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1H3H, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1h3ha_, region A [Jmol] [rasmolscript] [script source]

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1h3h_A] [1h3h] [1h3h_B]

Domain organization of [GRAP2_MOUSE] [LCP2_HUMAN] by SWISSPFAM

Domain found in 1H3H: [SH3 ] by SMART

Community annotation for 1H3H at PDBWiki (http://pdbwiki.org)

NMR Ensemble (OLDERADO: core, domain and representative structure database)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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