1H7M	Ribosomal Protein	date	Jul 09, 2001
title	Ribosomal Protein L30e From Thermococcus Celer
authors	Y.W.Chen, K.B.Wong
compound		source
Molecule: 50s Ribosomal Protein L30e Chain: A Synonym: Rpl30e, Rpl30 Engineered: Yes		Organism_scientific: Thermococcus Celer Organism_taxid: 2264 Atcc: 35543 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_variant: C41 Expression_system_plasmid: Prset-A
symmetry	Space Group: P 61	R_factor 0.165 R_Free 0.225
crystal cell	length a length b length c angle alpha angle beta angle gamma 48.320 48.320 86.420 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.96 Å
related structures	by homologous chain: 1W40, 1W42
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of ribosomal protein L30e from the extreme thermophile Thermococcus celer: thermal stability and RNA binding., Chen YW, Bycroft M, Wong KB, Biochemistry 2003 Mar 18;42(10):2857-65. PMID:12627951

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (22 Kb) [Save to disk] Biological Unit Coordinates (1h7m.pdb1.gz) 18 Kb CSU: Contacts of Structural Units for 1H7M Likely Quarternary Molecular Structure file(s) for 1H7M Structure Factors (56 Kb) Retrieve 1H7M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1H7M from S2C, [Save to disk] Re-refined 1h7m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1H7M in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1H7M

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1H7M, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1h7ma_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1h7m] [1h7m_A] SWISS-PROT database: [P29160] Domain organization of [RL30E_THECE] by SWISSPFAM

Other resources with information on 1H7M

Community annotation for 1H7M at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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Images from IMB Jena Image Library of Biological Macromolecules.

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