1HC8	Ribosome	date	Apr 27, 2001
title	Crystal Structure Of A Conserved Ribosomal Protein-Rna Compl
authors	G.L.Conn, D.E.Draper, E.E.Lattman, A.G.Gittis
compound		source
Molecule: Ribosomal Protein L11 Chain: A, B Fragment: C-Terminal Domain Of Ribosomal Protein L11 Engineered: Yes		Organism_scientific: Bacillus Stearothermophilus Organism_taxid: 1422 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet11
Molecule: 58 Nucleotide Ribosomal 23s Rna Domain Chain: C, D Fragment: Nts 1051-1108 From E. Coli 23s Rrna Engineered: Yes Mutation: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562 Other_details: Rna Synthesized By In Vitro Transcription Us Rna Polymerase
symmetry	Space Group: P 43 21 2	R_factor 0.217 R_Free 0.253
crystal cell	length a length b length c angle alpha angle beta angle gamma 150.675 150.675 63.841 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	GTP, K, MG, OS	enzyme
note	1HC8 is a representative structure
related structures	by homologous chain: 1MMS, 1Y39
Gene Ontology	Chain Function Process Component A, B
Primary reference	A compact RNA tertiary structure contains a buried backbone-K+ complex., Conn GL, Gittis AG, Lattman EE, Misra VK, Draper DE, J Mol Biol 2002 May 10;318(4):963-73. PMID:12054794

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk] Biological Unit Coordinates (1hc8.pdb1.gz) 37 Kb Biological Unit Coordinates (1hc8.pdb2.gz) 36 Kb LPC: Ligand-Protein Contacts for 1HC8 CSU: Contacts of Structural Units for 1HC8 Likely Quarternary Molecular Structure file(s) for 1HC8 Retrieve 1HC8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1HC8 from S2C, [Save to disk]

View 1HC8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1HC8

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1HC8, from MSDmotif at EBI Structure summary from SCOR (Structural Classification of RNA) Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1hc8a_, region A [Jmol] [rasmolscript] [script source]     - Domain d1hc8b_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1hc8_C] [1hc8_B] [1hc8_D] [1hc8_A] [1hc8] SWISS-PROT database: [P56210] Domain organization of [RL11_BACST] by SWISSPFAM Domain found in 1HC8: [RL11 ] by SMART

Other resources with information on 1HC8

Community annotation for 1HC8 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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