1HET Oxidoreductase date Nov 25, 2000
title Atomic X-Ray Structure Of Liver Alcohol Dehydrogenase Contai Hydroxide Adduct To Nadh
authors R.Meijers, R.J.Morris, H.W.Adolph, A.Merli, V.S.Lamzin, E.S.Ceder Zeppezauer
compound source
Molecule: Alcohol Dehydrogenase E Chain
Chain: A, B
Synonym: Alcohol Dehydrogenase I
Ec: 1.1.1.1
Other_details: Adduct Between Nc6 Of Nadh And Zinc Bound Hy
Organism_scientific: Equus Caballus
Organism_common: Domestic Horse
Organism_taxid: 9796
Organ: Liver
symmetry Space Group: P 1
R_factor 0.118 R_Free 0.135
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.100 44.400 94.000 104.60 101.50 70.50
method X-Ray Diffractionresolution 1.15 Å
ligand MRD, NAD, ZN enzyme Oxidoreductase E.C.1.1.1.1 BRENDA
related structures by homologous chain: 1HEU, 1MGO
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceOn the enzymatic activation of NADH., Meijers R, Morris RJ, Adolph HW, Merli A, Lamzin VS, Cedergren-Zeppezauer ES, J Biol Chem 2001 Mar 23;276(12):9316-21. PMID:11134046
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (317 Kb) [Save to disk]
  • Biological Unit Coordinates (1het.pdb1.gz) 310 Kb
  • LPC: Ligand-Protein Contacts for 1HET
  • CSU: Contacts of Structural Units for 1HET
  • Likely Quarternary Molecular Structure file(s) for 1HET
  • Structure Factors (2431 Kb)
  • Retrieve 1HET in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HET from S2C, [Save to disk]
  • Re-refined 1het structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HET in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HET
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1HET 1HETA 1HETB from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HET, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1heta1, region A:1-163,A:340-374 [Jmol] [rasmolscript] [script source]
        - Domain d1heta2, region A:164-339 [Jmol] [rasmolscript] [script source]
        - Domain d1hetb1, region B:1-163,B:340-374 [Jmol] [rasmolscript] [script source]
        - Domain d1hetb2, region B:164-339 [Jmol] [rasmolscript] [script source]
  • Fold representative 1het from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1het] [1het_A] [1het_B]
  • SWISS-PROT database: [P00327]
  • Domain organization of [ADH1E_HORSE] by SWISSPFAM
  • Other resources with information on 1HET
  • Community annotation for 1HET at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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