1HK6 Exocytosis date Mar 05, 2003
title Ral Binding Domain From Sec5
authors H.R.Mott, D.Nietlispach, L.J.Hopkins, G.Mirey, J.H.Camonis, D.Owe
compound source
Molecule: Exocyst Complex Component Sec5
Chain: A
Fragment: Ipt Domain, Residues 5-97
Synonym: Sec5l1
Engineered: Yes
Other_details: His-Met At N-Terminus From Cloning
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_vector: Pet16b
methodSolution NMR
related structures by homologous chain: 1UAD
Primary referenceStructure of the GTPase-binding domain of Sec5 and elucidation of its Ral binding site., Mott HR, Nietlispach D, Hopkins LJ, Mirey G, Camonis JH, Owen D, J Biol Chem 2003 May 9;278(19):17053-9. PMID:12624092
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (602 Kb) [Save to disk]
  • Biological Unit Coordinates (1hk6.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 1HK6
  • Retrieve 1HK6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HK6 from S2C, [Save to disk]
    • View 1HK6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HK6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HK6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hk6a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hk6] [1hk6_A]
  • SWISS-PROT database: [Q9D4H1]
  • Domain organization of [EXOC2_MOUSE] by SWISSPFAM
    • Other resources with information on 1HK6
  • Community annotation for 1HK6 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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