1HMA THE SOLUTION STRUCTURE AND DYNAMICS OF THE DNA BINDING DOMAIN OF HMG-D FROM DROSOPHILA MELANOGASTER date
authors Jones, D.N.M., Searles, M.A., Shaw, G.L., Churchill, M.E.A., Ner, S.S., Keeler, J., Travers, A.A., Neuhaus, D.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
related structures by homologous chain: 1E7J, 1QRV
Primary referenceThe solution structure and dynamics of the DNA-binding domain of HMG-D from Drosophila melanogaster., Jones DN, Searles MA, Shaw GL, Churchill ME, Ner SS, Keeler J, Travers AA, Neuhaus D, Structure 1994 Jul 15;2(7):609-27. PMID:7922039
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (395 Kb) [Save to disk]
  • Biological Unit Coordinates (1hma.pdb1.gz) 20 Kb
  • CSU: Contacts of Structural Units for 1HMA
  • Retrieve 1HMA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HMA from S2C, [Save to disk]
    • View 1HMA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1HMA
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HMA, from MSDmotif at EBI
  • Genome occurence of 1HMA's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hma__, region [Jmol] [rasmolscript] [script source]
  • Fold representative 1hma from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hma_A] [1hma]
  • SWISS-PROT database: [Q05783]
  • Domain organization of [HMGD_DROME] by SWISSPFAM
  • Domain found in 1HMA: [HMG ] by SMART
    • Other resources with information on 1HMA
  • Community annotation for 1HMA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1HMA from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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