1HNW Ribosome date Dec 08, 2000
title Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With Tetracycline
authors D.E.Brodersen, W.M.Clemons Jr., A.P.Carter, R.Morgan-Warren, B.T.Wimberly, V.Ramakrishnan
compound source
Molecule: 16s Ribosomal Rna
Chain: A
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Fragment Of Messenger Rna
Chain: X

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S2
Chain: B

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S3
Chain: C

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S4
Chain: D

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S5
Chain: E

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S6
Chain: F

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S7
Chain: G

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S8
Chain: H

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S9
Chain: I

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S10
Chain: J

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S11
Chain: K

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S12
Chain: L

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S13
Chain: M

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S14
Chain: N

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S15
Chain: O

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S16
Chain: P

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S17
Chain: Q

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S18
Chain: R

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S19
Chain: S

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S20
Chain: T

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein Thx
Chain: V

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: P 41 21 2
R_factor 0.222 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
401.158 401.158 176.944 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.40 Å
ligand MG, TAC, ZN enzyme
note 1HNW (Molecule of the Month:pdb121)
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


V


Primary referenceThe structural basis for the action of the antibiotics tetracycline, pactamycin, and hygromycin B on the 30S ribosomal subunit., Brodersen DE, Clemons WM Jr, Carter AP, Morgan-Warren RJ, Wimberly BT, Ramakrishnan V, Cell 2000 Dec 22;103(7):1143-54. PMID:11163189
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (955 Kb) [Save to disk]
  • Biological Unit Coordinates (1hnw.pdb1.gz) 937 Kb
  • LPC: Ligand-Protein Contacts for 1HNW
  • CSU: Contacts of Structural Units for 1HNW
  • Likely Quarternary Molecular Structure file(s) for 1HNW
  • Structure Factors (2176 Kb)
  • Retrieve 1HNW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HNW from S2C, [Save to disk]
  • Re-refined 1hnw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HNW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HNW
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HNW, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1hnwb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1hnwc2, region C:107-207 [Jmol] [rasmolscript] [script source]
        - Domain d1hnwc1, region C:2-106 [Jmol] [rasmolscript] [script source]
        - Domain d1hnwd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1hnwe2, region E:5-73 [Jmol] [rasmolscript] [script source]
        - Domain d1hnwe1, region E:74-154 [Jmol] [rasmolscript] [script source]
        - Domain d1hnwf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1hnwg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1hnwh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1hnwi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1hnwj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1hnwk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1hnwl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1hnwm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1hnwn_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1hnwo_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1hnwp_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1hnwq_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1hnwr_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1hnws_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1hnwt_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1hnwv_, region V [Jmol] [rasmolscript] [script source]
  • Fold representative 1hnw from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1hnw_I] [1hnw_X] [1hnw_F] [1hnw_K] [1hnw_S] [1hnw] [1hnw_M] [1hnw_D] [1hnw_H] [1hnw_Q] [1hnw_R] [1hnw_G] [1hnw_V] [1hnw_O] [1hnw_C] [1hnw_L] [1hnw_A] [1hnw_J] [1hnw_N] [1hnw_E] [1hnw_B] [1hnw_P] [1hnw_T]
  • SWISS-PROT database: [Q5SHN7] [P80376] [Q5SHN3] [P80377] [Q5SHQ1] [Q5SJ76] [Q5SJH3] [Q5SHP7] [Q5SLQ0] [Q5SHP2] [P80380] [P80371] [P80372] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2] [P80374] [Q5SIH3]
  • Domain organization of [RS10_THET8] [RS11_THET8] [RS12_THET8] [RS13_THET8] [RS14Z_THET8] [RS15_THET8] [RS16_THET8] [RS17_THET8] [RS18_THET8] [RS19_THET8] [RS20_THET8] [RS2_THET8] [RS3_THET8] [RS4_THET8] [RS5_THET8] [RS6_THET8] [RS7_THET8] [RS8_THET8] [RS9_THET8] [RSHX_THET8] by SWISSPFAM
  • Domains found in 1HNW: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 1HNW
  • Community annotation for 1HNW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1HNW from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science