1HO6 Dna, Rna date Dec 08, 2000
title Chimeric Arabinonucleic Acid (Ana) Hairpin With Anarna Hybrid Stem
authors A.Y.Denisov, K.Gehring
compound source
Molecule: Dnarna (5'-R(Gpgpapc)-D(Ptptpcpg)- (P(Gao)P(Uar)P(Car)P(Car)-3');
Chain: A
Engineered: Yes
Synthetic: Yes
Other_details: Solid Phase Synthesis, Phosphoramidite Chemistry
methodSolution NMR
ligand CAR, GAO, UAR enzyme
Primary referenceSolution structure of an arabinonucleic acid (ANA)/RNA duplex in a chimeric hairpin: comparison with 2'-fluoro-ANA/RNA and DNA/RNA hybrids., Denisov AY, Noronha AM, Wilds CJ, Trempe JF, Pon RT, Gehring K, Damha MJ, Nucleic Acids Res 2001 Nov 1;29(21):4284-93. PMID:11691916
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • LPC: Ligand-Protein Contacts for 1HO6
  • CSU: Contacts of Structural Units for 1HO6
  • Original NMR restraints for 1HO6 from PDB
  • Retrieve 1HO6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HO6 from S2C, [Save to disk]
  • View 1HO6 in 3D
  • Proteopedia, because life has more than 2D.
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  • Visual 3D analysis of 1HO6
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  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1HO6, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Fold representative 1ho6 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ho6] [1ho6_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1HO6
  • Community annotation for 1HO6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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