1HT8 Oxidoreductase date Dec 29, 2000
title The 2.7 Angstrom Resolution Model Of Ovine Cox-1 Complexed W Alclofenac
authors B.S.Selinsky, K.Gupta, C.T.Sharkey, P.J.Loll
compound source
Molecule: Prostaglandin H2 Synthase-1
Chain: A, B
Ec: 1.14.99.1
Organism_scientific: Ovis Aries
Organism_common: Sheep
Organism_taxid: 9940
Organ: Seminal Vesicle
symmetry Space Group: I 2 2 2
R_factor 0.211 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
99.149 208.450 222.399 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.69 Å
ligand 34C, BOG, HEM, NAG enzyme Oxidoreductase E.C.1.14.99.1 BRENDA
related structures by homologous chain: 1EQG, 1EQH
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • peroxidase activity


  • Primary referenceStructural analysis of NSAID binding by prostaglandin H2 synthase: time-dependent and time-independent inhibitors elicit identical enzyme conformations., Selinsky BS, Gupta K, Sharkey CT, Loll PJ, Biochemistry 2001 May 1;40(17):5172-80. PMID:11318639
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (194 Kb) [Save to disk]
  • Biological Unit Coordinates (1ht8.pdb1.gz) 187 Kb
  • LPC: Ligand-Protein Contacts for 1HT8
  • CSU: Contacts of Structural Units for 1HT8
  • Likely Quarternary Molecular Structure file(s) for 1HT8
  • Structure Factors (726 Kb)
  • Retrieve 1HT8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1HT8 from S2C, [Save to disk]
  • Re-refined 1ht8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1HT8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1HT8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1HT8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ht8a2, region A:33-73 [Jmol] [rasmolscript] [script source]
        - Domain d1ht8a1, region A:74-583 [Jmol] [rasmolscript] [script source]
        - Domain d1ht8b2, region B:33-73 [Jmol] [rasmolscript] [script source]
        - Domain d1ht8b1, region B:74-583 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ht8] [1ht8_A] [1ht8_B]
  • SWISS-PROT database: [P05979]
  • Domain organization of [PGH1_SHEEP] by SWISSPFAM
  • Domain found in 1HT8: [EGF ] by SMART
  • Other resources with information on 1HT8
  • Community annotation for 1HT8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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