1I96 Ribosome date Mar 18, 2001
title Crystal Structure Of The 30s Ribosomal Subunit From Thermus Thermophilus In Complex With The Translation Initiation Factor If3 (C-Terminal Domain)
authors M.Pioletti, F.Schluenzen, J.Harms, R.Zarivach, M.Gluehmann, H.Avila, H.Bartels, C.Jacobi, T.Hartsch, A.Yonath, F.Franceschi
compound source
Molecule: 16s Rrna
Chain: A
Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S2
Chain: B

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S3
Chain: C

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S4
Chain: D

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S5
Chain: E

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S6
Chain: F

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S7
Chain: G

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S8
Chain: H

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S9
Chain: I

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S10
Chain: J

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S11
Chain: K

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S12
Chain: L

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S13
Chain: M

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S14
Chain: N

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S15
Chain: O

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S16
Chain: P

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S17
Chain: Q

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S18
Chain: R

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S19
Chain: S

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein S20
Chain: T

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: 30s Ribosomal Protein Thx
Chain: U

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274

Molecule: Translation Initiation Factor If3
Chain: V
Fragment: C-Terminal Domain

Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
symmetry Space Group: P 41 21 2
R_factor 0.205 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
407.500 407.500 174.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.20 Å
ligand MG, WO2, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


U


V


Primary referenceCrystal structures of complexes of the small ribosomal subunit with tetracycline, edeine and IF3., Pioletti M, Schlunzen F, Harms J, Zarivach R, Gluhmann M, Avila H, Bashan A, Bartels H, Auerbach T, Jacobi C, Hartsch T, Yonath A, Franceschi F, EMBO J 2001 Apr 17;20(8):1829-39. PMID:11296217
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (652 Kb) [Save to disk]
  • Biological Unit Coordinates (1i96.pdb1.gz) 636 Kb
  • LPC: Ligand-Protein Contacts for 1I96
  • CSU: Contacts of Structural Units for 1I96
  • Likely Quarternary Molecular Structure file(s) for 1I96
  • Retrieve 1I96 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1I96 from S2C, [Save to disk]
  • View 1I96 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1I96
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1I96, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1i96b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1i96c2, region C:107-207 [Jmol] [rasmolscript] [script source]
        - Domain d1i96c1, region C:2-106 [Jmol] [rasmolscript] [script source]
        - Domain d1i96d_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1i96e2, region E:2-73 [Jmol] [rasmolscript] [script source]
        - Domain d1i96e1, region E:74-157 [Jmol] [rasmolscript] [script source]
        - Domain d1i96f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1i96g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1i96h_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1i96i_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1i96j_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1i96k_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1i96l_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1i96m_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1i96n_, region N [Jmol] [rasmolscript] [script source]
        - Domain d1i96o_, region O [Jmol] [rasmolscript] [script source]
        - Domain d1i96p_, region P [Jmol] [rasmolscript] [script source]
        - Domain d1i96q_, region Q [Jmol] [rasmolscript] [script source]
        - Domain d1i96r_, region R [Jmol] [rasmolscript] [script source]
        - Domain d1i96s_, region S [Jmol] [rasmolscript] [script source]
        - Domain d1i96t_, region T [Jmol] [rasmolscript] [script source]
        - Domain d1i96u_, region U [Jmol] [rasmolscript] [script source]
        - Domain d1i96v_, region V [Jmol] [rasmolscript] [script source]
  • Fold representative 1i96 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1i96_C] [1i96_I] [1i96_F] [1i96_L] [1i96_A] [1i96_M] [1i96_H] [1i96_G] [1i96_K] [1i96_D] [1i96_R] [1i96_B] [1i96_N] [1i96_P] [1i96_E] [1i96_O] [1i96_V] [1i96_Q] [1i96_U] [1i96_T] [1i96] [1i96_S] [1i96_J]
  • SWISS-PROT database: [Q5SKU2] [Q5SHN7] [P80376] [Q5SHN3] [P80377] [Q5SHQ1] [Q5SJ76] [Q5SJH3] [Q5SHP7] [Q5SLQ0] [Q5SHP2] [P80380] [P80371] [P80372] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2] [P62669] [P80374] [Q5SIH3]
  • Domain organization of [IF3_THET8] [RS10_THET8] [RS11_THET8] [RS12_THET8] [RS13_THET8] [RS14Z_THET8] [RS15_THET8] [RS16_THET8] [RS17_THET8] [RS18_THET8] [RS19_THET8] [RS20_THET8] [RS2_THET8] [RS3_THET8] [RS4_THET8] [RS5_THET8] [RS6_THET8] [RS7_THET8] [RS8_THET8] [RS9_THET2] [RS9_THET8] [RSHX_THET8] by SWISSPFAM
  • Domains found in 1I96: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART
  • Other resources with information on 1I96
  • Community annotation for 1I96 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1I96 from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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