1IBM date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand MG, ZN enzyme
note 1IBM (Molecule of the Month:pdb146)
Gene
Ontology
ChainFunctionProcessComponent
B


C


D


E


F


G


H


I


J


K


L


M


N


O


P


Q


R


S


T


V


Primary referenceRecognition of cognate transfer RNA by the 30S ribosomal subunit., Ogle JM, Brodersen DE, Clemons WM Jr, Tarry MJ, Carter AP, Ramakrishnan V, Science 2001 May 4;292(5518):897-902. PMID:11340196
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (940 Kb) [Save to disk]
  • Biological Unit Coordinates (1ibm.pdb1.gz) 928 Kb
  • LPC: Ligand-Protein Contacts for 1IBM
  • CSU: Contacts of Structural Units for 1IBM
  • Likely Quarternary Molecular Structure file(s) for 1IBM
  • Structure Factors (1701 Kb)
  • Retrieve 1IBM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IBM from S2C, [Save to disk]
  • Re-refined 1ibm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1IBM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ibm] [1ibm_A] [1ibm_B] [1ibm_C] [1ibm_D] [1ibm_E] [1ibm_F] [1ibm_G] [1ibm_H] [1ibm_I] [1ibm_J] [1ibm_K] [1ibm_L] [1ibm_M] [1ibm_N] [1ibm_O] [1ibm_P] [1ibm_Q] [1ibm_R] [1ibm_S] [1ibm_T] [1ibm_V] [1ibm_X] [1ibm_Y] [1ibm_Z]
  • SWISS-PROT database: [Q5SHN7] [P80376] [Q5SHN3] [P80377] [Q5SHQ1] [Q5SJ76] [Q5SJH3] [Q5SHP7] [Q5SLQ0] [Q5SHP2] [P80380] [P80371] [P80372] [P80373] [Q5SHQ5] [Q5SLP8] [P17291] [Q5SHQ2] [P80374] [Q5SIH3]
  • Domains found in 1IBM: [KH] [Ribosomal_S10] [Ribosomal_S15] [Ribosomal_S4] [S4 ] by SMART

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