1IH9 NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles date
authors Shenkarev, Z.O., Balasheva, T.A., Efremov, R.G., Yakimenko, Z.A., Ovchinnikova, T.V., Raap, J., Arseniev, A.S.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffraction, 20 Modelsresolution
ligand ACE, AIB, DIV, HYP, PHL enzyme
Primary referenceSpatial structure of zervamicin IIB bound to DPC micelles: implications for voltage-gating., Shenkarev ZO, Balashova TA, Efremov RG, Yakimenko ZA, Ovchinnikova TV, Raap J, Arseniev AS, Biophys J 2002 Feb;82(2):762-71. PMID:11806918
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1ih9.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 1IH9
  • CSU: Contacts of Structural Units for 1IH9
  • Original NMR restraints for 1IH9 from PDB
  • Retrieve 1IH9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IH9 from S2C, [Save to disk]
  • View 1IH9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IH9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1IH9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ih9a_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ih9] [1ih9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1IH9
  • Community annotation for 1IH9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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