1IID	Transferase	date	Apr 22, 2001
title	Crystal Structure Of Saccharomyces Cerevisiae N-Myristoyltra With Bound S-(2-Oxo)Pentadecylcoa And The Octapeptide Glyas
authors	T.A.Farazi, J.I.Gordon, G.Waksman
compound		source
Molecule: Peptide N-Myristoyltransferase Chain: A Fragment: N-Myristoyltransferase (N-Terminal 33 Residues De Synonym: Glycylpeptide N-Tetradecanoyltransferase Ec: 2.3.1.97 Engineered: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Nmt Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm101 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pbb502
Molecule: Octapeptide Glyaskla Chain: O Engineered: Yes		Synthetic: Yes Other_details: This Peptide Was Chemically Synthesized.
symmetry	Space Group: C 2 2 21	R_factor 0.242 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.129 97.060 141.809 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	NHM, NI	enzyme	Transferase E.C.2.3.1.97 BRENDA
related structures	by homologous chain: 1IIC, 2NMT
Gene Ontology	Chain Function Process Component A
Primary reference	Structures of Saccharomyces cerevisiae N-myristoyltransferase with bound myristoylCoA and peptide provide insights about substrate recognition and catalysis., Farazi TA, Waksman G, Gordon JI, Biochemistry 2001 May 29;40(21):6335-43. PMID:11371195

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk] Biological Unit Coordinates (1iid.pdb1.gz) 73 Kb LPC: Ligand-Protein Contacts for 1IID CSU: Contacts of Structural Units for 1IID Likely Quarternary Molecular Structure file(s) for 1IID Retrieve 1IID in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1IID from S2C, [Save to disk]

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1IID

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1IID, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1iida2, region A:219-455 [Jmol] [rasmolscript] [script source]     - Domain d1iida1, region A:34-218 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1iid] [1iid_O] [1iid_A] SWISS-PROT database: [P14743] Domain organization of [NMT_YEAST] by SWISSPFAM

Other resources with information on 1IID

Community annotation for 1IID at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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