1IIR	Transferase	date	Apr 24, 2001
title	Crystal Structure Of Udp-Glucosyltransferase Gtfb
authors	A.M.Mulichak, H.C.Losey, C.T.Walsh, R.M.Garavito
compound		source
Molecule: Glycosyltransferase Gtfb Chain: A Synonym: Udp-Glycosyltransferase Gtfb Ec: 2.4.1.- Engineered: Yes		Organism_scientific: Amycolatopsis Orientalis Organism_taxid: 31958 Strain: A82846 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b
symmetry	Space Group: P 41 21 2	R_factor 0.211 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.110 102.110 83.350 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	MG, SO4	enzyme	Transferase E.C.2.4.1 BRENDA
related structures	by homologous chain: 1PN3, 1RRV
Gene Ontology	Chain Function Process Component A
Primary reference	Structure of the UDP-glucosyltransferase GtfB that modifies the heptapeptide aglycone in the biosynthesis of vancomycin group antibiotics., Mulichak AM, Losey HC, Walsh CT, Garavito RM, Structure (Camb) 2001 Jul 3;9(7):547-57. PMID:11470430

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (1iir.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 1IIR CSU: Contacts of Structural Units for 1IIR Likely Quarternary Molecular Structure file(s) for 1IIR Structure Factors (949 Kb) Retrieve 1IIR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1IIR from S2C, [Save to disk] Re-refined 1iir structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1IIR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1IIR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1IIR, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1iira_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1iir_A] [1iir] SWISS-PROT database: [P96559] Domain organization of [P96559_AMYOR] by SWISSPFAM

Other resources with information on 1IIR

Community annotation for 1IIR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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