1IJ0 Transcription date Apr 24, 2001
title Coiled Coil Trimer Gcn4-Pvls Ser At Buried D Position
authors D.L.Akey, V.N.Malashkevich, P.S.Kim
compound source
Molecule: General Control Protein Gcn4
Chain: A, B, C
Fragment: Coiled Coil Region
Synonym: Gcn4-Pvls
Engineered: Yes
Mutation: Yes
Synthetic: Yes
Other_details: This Protein Was Chemically Synthesized Usin Phase Fmoc Peptide Synthesis. It Is Naturally Found In Sacc Cerevisiae (Yeast).
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.258
length a length b length c angle alpha angle beta angle gamma
35.466 28.616 44.496 90.00 109.60 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand ACE, ZN enzyme
related structures by homologous chain: 1IJ1, 1IJ3
Primary referenceBuried polar residues in coiled-coil interfaces., Akey DL, Malashkevich VN, Kim PS, Biochemistry 2001 May 29;40(21):6352-60. PMID:11371197
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (23 Kb) [Save to disk]
  • Biological Unit Coordinates (1ij0.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 1IJ0
  • CSU: Contacts of Structural Units for 1IJ0
  • Likely Quarternary Molecular Structure file(s) for 1IJ0
  • Structure Factors (50 Kb)
  • Retrieve 1IJ0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IJ0 from S2C, [Save to disk]
  • Re-refined 1ij0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1IJ0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IJ0
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1IJ0, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ij0a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ij0b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1ij0c_, region C [Jmol] [rasmolscript] [script source]
  • Fold representative 1ij0 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ij0] [1ij0_A] [1ij0_C] [1ij0_B]
  • SWISS-PROT database: [P03069]
  • Domain organization of [GCN4_YEAST] by SWISSPFAM
  • Other resources with information on 1IJ0
  • Community annotation for 1IJ0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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