1IJQ	Lipid Transport	date	Apr 27, 2001
title	Crystal Structure Of The Ldl Receptor Ywtd-Egf Domain Pair
authors	H.Jeon, W.Meng, J.Takagi, M.J.Eck, T.A.Springer, S.C.Blacklow
compound		source
Molecule: Low-Density Lipoprotein Receptor Chain: A, B Fragment: Ywtd-E3 Domain Synonym: Ldl Receptor Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ldlr Expression_system: Cricetulus Griseus Expression_system_common: Chinese Hamster Expression_system_taxid: 10029 Expression_system_strain: Cholec Expression_system_organ: Ovary Expression_system_cell: Cho Expression_system_vector_type: Plasmid Expression_system_plasmid: Pef1-V5-His
symmetry	Space Group: P 32 2 1	R_factor 0.208 R_Free 0.250
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.284 76.284 265.445 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.50 Å
Primary reference	Implications for familial hypercholesterolemia from the structure of the LDL receptor YWTD-EGF domain pair., Jeon H, Meng W, Takagi J, Eck MJ, Springer TA, Blacklow SC, Nat Struct Biol 2001 Jun;8(6):499-504. PMID:11373616

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk] Biological Unit Coordinates (1ijq.pdb1.gz) 62 Kb Biological Unit Coordinates (1ijq.pdb2.gz) 62 Kb CSU: Contacts of Structural Units for 1IJQ Likely Quarternary Molecular Structure file(s) for 1IJQ Structure Factors (1196 Kb) Retrieve 1IJQ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1IJQ from S2C, [Save to disk] Re-refined 1ijq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1IJQ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1IJQ

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1IJQ 1IJQA 1IJQB from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1IJQ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ijqa1, region A:377-642 [Jmol] [rasmolscript] [script source]     - Domain d1ijqa2, region A:643-692 [Jmol] [rasmolscript] [script source]     - Domain d1ijqb1, region B:377-642 [Jmol] [rasmolscript] [script source]     - Domain d1ijqb2, region B:643-692 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ijq] [1ijq_B] [1ijq_A] SWISS-PROT database: [P01130] Domain organization of [LDLR_HUMAN] by SWISSPFAM Domains found in 1IJQ: [EGF] [LY ] by SMART

Other resources with information on 1IJQ

Community annotation for 1IJQ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---