1IJS Virus Dna date Sep 12, 1996
title Cpv (Strain D) Mutant A300d, Complex (Viral Coatdna), Vp2, T=4 Degrees C
authors A.L.Llamas-Saiz, M.Agbandje-Mckenna, J.S.L.Parker, A.T.M.Wahid, C.R.Parrish, M.G.Rossmann
compound source
Molecule: Protein (Parvovirus Coat Protein)
Chain: P
Engineered: Yes
Mutation: Yes
Organism_scientific: Canine Parvovirus
Organism_taxid: 10788
Strain: Strain D
Cell_line: Canine (Canis Familiaris) A72
Expression_system: Canis Lupus Familiaris
Expression_system_common: Dog
Expression_system_taxid: 9615
Expression_system_strain: Familiaris
Expression_system_cell_line: Canine A72

Molecule: Dna (5'-D(Cpcpapcpcpcpcpapa)-3')
Chain: N
Synonym: Dna Fragment Of Canine Parvovirus
Engineered: Yes

Organism_scientific: Canine Parvovirus
Organism_taxid: 10788
Strain: Strain D

Molecule: Dna (5'-D(Apc)-3')
Chain: A
Synonym: Dna Fragment Of Canine Parvovirus
Engineered: Yes

Organism_scientific: Canine Parvovirus
Organism_taxid: 10788
Strain: D
symmetry Space Group: P 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
267.600 268.500 274.300 61.90 62.60 60.20
method X-Ray Diffractionresolution 3.25 Å
Gene
Ontology
ChainFunctionProcessComponent
P


Primary referenceStructural analysis of a mutation in canine parvovirus which controls antigenicity and host range., Llamas-Saiz AL, Agbandje-McKenna M, Parker JS, Wahid AT, Parrish CR, Rossmann MG, Virology 1996 Nov 1;225(1):65-71. PMID:8918534
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (88 Kb) [Save to disk]
  • Biological Unit Coordinates (1ijs.pdb1.gz) 4669 Kb
  • CSU: Contacts of Structural Units for 1IJS
  • Likely Quarternary Molecular Structure file(s) for 1IJS
  • Structure Factors (2332 Kb)
  • Retrieve 1IJS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1IJS from S2C, [Save to disk]
  • View 1IJS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1IJS
  • VIPERdb: visual, structural and computational analysis of 1IJS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 1IJS, from MSDmotif at EBI
  • Genome occurence of 1IJS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ijsp_, region P [Jmol] [rasmolscript] [script source]
  • Fold representative 1ijs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ijs_P] [1ijs_N] [1ijs] [1ijs_A]
  • SWISS-PROT database: [P30129]
  • Domain organization of [COAT_PAVC2] by SWISSPFAM
  • Other resources with information on 1IJS
  • Community annotation for 1IJS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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