1IVY	Carboxypeptidase	date	Jun 12, 1996
title	Physiological Dimer Hpp Precursor
authors	G.Rudenko, E.Bonten, A.D'Azzo, W.G.J.Hol
compound		source
Molecule: Human Protective Protein Chain: A, B Synonym: Protective Proteincathepsin A, Carboxypeptidase L Ec: 3.4.16.5 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Cell_line: Sf21 Gene: Hupp54 Expression_system: Sf21 Insect Cells Expression_system_gene: Hupp54 Other_details: Baculovirus Mediated Over-Expression. See Bo Al. 1995, J.B.C. 270, P. 26441-26445
symmetry	Space Group: P 21 21 2	R_factor 0.213 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 115.040 148.110 80.970 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	NAG, NDG	enzyme	Hydrolase E.C.3.4.16.5 BRENDA
Gene Ontology	Chain Function Process Component A, B enzyme activator activity
Primary reference	Three-dimensional structure of the human 'protective protein': structure of the precursor form suggests a complex activation mechanism., Rudenko G, Bonten E, d'Azzo A, Hol WG, Structure 1995 Nov 15;3(11):1249-59. PMID:8591035

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (155 Kb) [Save to disk] Biological Unit Coordinates (1ivy.pdb1.gz) 149 Kb LPC: Ligand-Protein Contacts for 1IVY CSU: Contacts of Structural Units for 1IVY Likely Quarternary Molecular Structure file(s) for 1IVY Retrieve 1IVY in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1IVY from S2C, [Save to disk]

View 1IVY in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1IVY

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1IVY, from MSDmotif at EBI Genome occurence of 1IVY's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ivya_, region A [Jmol] [rasmolscript] [script source]     - Domain d1ivyb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ivy] [1ivy_A] [1ivy_B] SWISS-PROT database: [P10619] Domain organization of [PPGB_HUMAN] by SWISSPFAM

Other resources with information on 1IVY

Community annotation for 1IVY at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---