1IXD	Antitumor Protein	date	Jun 19, 2002
title	Solution Structure Of The Cap-Gly Domain From Human Cylindro Tomour-Suppressor Cyld
authors	K.Saito, S.Koshiba, T.Kigawa, S.Yokoyama, Riken Structural Genomicsproteomics Initiative (Rsgi)
compound		source
Molecule: Cylindromatosis Tumour-Suppressor Cyld Chain: A Fragment: Cap-Gly Domain Synonym: Probable Ubiquitin Carboxyl-Terminal Hydrolase Cyl Ubiquitin Thiolesterase Cyld, Ubiquitin-Specific Processing Cyld, Deubiquitinating Enzyme Cyld, Hspc057; Ec: 3.1.2.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fh04363 Expression_system_vector_type: Plasmid Expression_system_plasmid: P011213-03 Other_details: Cell-Free Protein Synthesis
method	Solution NMR
ligand		enzyme	Hydrolase E.C.3.1.2.15 BRENDA
Primary reference	The CAP-Gly domain of CYLD associates with the proline-rich sequence in NEMO/IKKgamma., Saito K, Kigawa T, Koshiba S, Sato K, Matsuo Y, Sakamoto A, Takagi T, Shirouzu M, Yabuki T, Nunokawa E, Seki E, Matsuda T, Aoki M, Miyata Y, Hirakawa N, Inoue M, Terada T, Nagase T, Kikuno R, Nakayama M, Ohara O, Tanaka A, Yokoyama S, Structure (Camb) 2004 Sep;12(9):1719-28. PMID:15341735

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (507 Kb) [Save to disk] Biological Unit Coordinates (1ixd.pdb1.gz) 25 Kb CSU: Contacts of Structural Units for 1IXD Retrieve 1IXD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1IXD from S2C, [Save to disk]

View 1IXD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1IXD

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1IXD, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ixda_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ixd_A] [1ixd] SWISS-PROT database: [Q9NQC7] Domain organization of [CYLD_HUMAN] by SWISSPFAM Domain found in 1IXD: [CAP_GLY ] by SMART

Other resources with information on 1IXD

Community annotation for 1IXD at PDBWiki (http://pdbwiki.org) NMR Ensemble (OLDERADO: core, domain and representative structure database) MMDB (Entrez's Structure Database)

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