1J1I Hydrolase date Dec 05, 2002
title Crystal Structure Of A His-Tagged Serine Hydrolase Involved Carbazole Degradation (Carc Enzyme)
authors H.Habe, K.Morii, S.Fushinobu, J.W.Nam, Y.Ayabe, T.Yoshida, T.Wakag H.Yamane, H.Nojiri, T.Omori
compound source
Molecule: Meta Cleavage Compound Hydrolase
Chain: A
Synonym: Serine Hydrolase Involved In The Carbazole Degrada Carc;
Ec: 3.7.1.8
Engineered: Yes
Organism_scientific: Janthinobacterium
Organism_taxid: 29580
Strain: J3
Gene: Carc
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet26b(+)
Expression_system_plasmid: Pecj3
symmetry Space Group: I 4 2 2
R_factor 0.215 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.268 130.268 84.491 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.86 Å
ligand
enzyme Hydrolase E.C.3.7.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a histidine-tagged serine hydrolase involved in the carbazole degradation (CarC enzyme)., Habe H, Morii K, Fushinobu S, Nam JW, Ayabe Y, Yoshida T, Wakagi T, Yamane H, Nojiri H, Omori T, Biochem Biophys Res Commun 2003 Apr 4;303(2):631-9. PMID:12659866
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (49 Kb) [Save to disk]
  • Biological Unit Coordinates (1j1i.pdb1.gz) 87 Kb
  • CSU: Contacts of Structural Units for 1J1I
  • Likely Quarternary Molecular Structure file(s) for 1J1I
  • Structure Factors (233 Kb)
  • Retrieve 1J1I in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J1I from S2C, [Save to disk]
  • Re-refined 1j1i structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1J1I in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J1I
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J1I, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1j1ia_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j1i] [1j1i_A]
  • SWISS-PROT database: [Q84II3]
  • Domain organization of [Q84II3_9BURK] by SWISSPFAM
  • Other resources with information on 1J1I
  • Community annotation for 1J1I at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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