1J8G X-ray Analysis of a RNA Tetraplex r(uggggu)4 at Ultra-High Resolution date
authors Deng, J., Xiong, Y., Sundaralingam, M.
compound source
symmetry
R_factor
R_Free 0.112
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 0.61
ligand CA, NA, SPM, SR enzyme
Primary referenceX-ray analysis of an RNA tetraplex (UGGGGU)(4) with divalent Sr(2+) ions at subatomic resolution (0.61 A)., Deng J, Xiong Y, Sundaralingam M, Proc Natl Acad Sci U S A 2001 Nov 20;98(24):13665-70. PMID:11707581
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (32 Kb) [Save to disk]
  • Biological Unit Coordinates (1j8g.pdb1.gz) 14 Kb
  • Biological Unit Coordinates (1j8g.pdb2.gz) 12 Kb
  • Biological Unit Coordinates (1j8g.pdb3.gz) 13 Kb
  • Biological Unit Coordinates (1j8g.pdb4.gz) 12 Kb
  • LPC: Ligand-Protein Contacts for 1J8G
  • CSU: Contacts of Structural Units for 1J8G
  • Likely Quarternary Molecular Structure file(s) for 1J8G
  • Retrieve 1J8G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1J8G from S2C, [Save to disk]
  • View 1J8G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1J8G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1J8G, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1j8g_B] [1j8g] [1j8g_C] [1j8g_A] [1j8g_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1J8G
  • Community annotation for 1J8G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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