1JB6 Transcription date Jun 01, 2001
title Crystal Structure Of Dimerization Domain (1-33) Of Hnf-1alph
authors N.Narayana, Q.X.Hua, M.A.Weiss
compound source
Molecule: Hepatocyte Nuclear Factor 1-Alpha
Chain: A, B
Fragment: Dimerization Domain (Residues 1-32)
Synonym: Hnf-1a
Engineered: Yes
 Synthetic: Yes
Other_details: This Peptide Was Chemically Synthesized. The Of This Peptide Occurs Naturally In Mus Musculus (Mouse) As In Homo Sapiens (Humans).
symmetry Space Group: P 21 21 2
R_factor 0.231 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
28.420 42.190 42.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand MSE, NLE enzyme
Primary referenceThe dimerization domain of HNF-1alpha: structure and plasticity of an intertwined four-helix bundle with application to diabetes mellitus., Narayana N, Hua Q, Weiss MA, J Mol Biol 2001 Jul 13;310(3):635-58. PMID:11439029
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (15 Kb) [Save to disk]
  • Biological Unit Coordinates (1jb6.pdb1.gz) 9 Kb
  • Biological Unit Coordinates (1jb6.pdb2.gz) 7 Kb
  • Biological Unit Coordinates (1jb6.pdb3.gz) 21 Kb
  • Biological Unit Coordinates (1jb6.pdb4.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 1JB6
  • CSU: Contacts of Structural Units for 1JB6
  • Likely Quarternary Molecular Structure file(s) for 1JB6
  • Structure Factors (89 Kb)
  • Retrieve 1JB6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JB6 from S2C, [Save to disk]
  • Re-refined 1jb6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1JB6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1JB6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JB6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jb6a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1jb6b_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jb6_B] [1jb6_A] [1jb6]
  • SWISS-PROT database: [P22361]
  • Domain organization of [HNF1A_MOUSE] by SWISSPFAM
    • Other resources with information on 1JB6
  • Community annotation for 1JB6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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